CHKDSK runs each time I swap OS drive+OS select at boot

antares

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Here is my issue:
DISK1: SSD with Windows 7x64 Ultimate installed and running fine
DISK2: 2nd internal HD for data
DISK3: SSD with Windows 8x64 Pro installed

So my initial configuration (stable and working fine) is DISK1+DISK2. I then disconnected DISK2 and replaced DISK1 with a fresh SSD to install WIn8x64 (DISK3), I then reconnected DISK2 and the configuration DISK3+DISK2 is stable and working fine. Issue is that each time I swap DISK1 with DISK3 and viceversa, at boot I get a prompt to run CHKDSK for DISK2, with DISK1 I have time to press any key and skip it, but with DISK3 I have no time to press it and I'm forced to run CHKDSK and wait until finished. (Fast Boot is disabled in BIOS).
Question: If I connect all 3 drives (DISK1+2+3), will I be able to choose which OS to run at boot? If not, how can I configure this? Thanks
 

My Computer

System One

  • OS
    Windows 8.1x64 Pro
    Computer type
    PC/Desktop
    System Manufacturer/Model
    self made
    CPU
    Intel Core i7 6700K
    Motherboard
    Asus Z170-A
    Memory
    Corsair Vengeance LPX 32GB (4 x 8GB) DDR4 2400MHz
    Graphics Card(s)
    Intel HD Graphics 530
    Sound Card
    Onboard Realtek HD
    Monitor(s) Displays
    LG 23EA53 23" LED IPS
    Screen Resolution
    1920x1080 32bit
    Hard Drives
    Samsung 256GB 830 Series SSD main+HGST 4TB 7200RPM as 2nd internal
    PSU
    Thermaltake Toughpower Grand 850W TPG-850M
    Case
    Corsair Obsidian 650DW-1 Midtower
    Cooling
    Noctua NH-D14
    Keyboard
    Logitech K800
    Mouse
    Logitech M510
    Antivirus
    NIS2014
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