If the utility is not suited to you I suggest not using it.I can't ever use a set of predefined folders, cos I use all different ones all the time.
I know marketing types say stuff like "this acne crap was created by a dermatologist for his own children" yadda yadda. But in my case it's a fact that my utilities were, for the most part, created for my use. I share them because some people may get use out of them. The ones I didn't create for myself were written by request. Usually on Coding Snacks forum.
Edit: Also you can open more than one folder without predefining them, if they can be selected. For example, several subfolders of the current folder. Add a shortcut to Fold to the SendTo Menu. Select several folders and right click to get the SendTo Menu, then left click on Fold.